Can you still use Commanders Strike if the only attack available to forego is an attack against an ally? Why in the Sierpiski Triangle is this set being used as the example for the OSC and not a more "natural"? In order to get the libraries and header files necessary for compiling and building, there is usually a separate libXXX-dev package (-dev indicating that the packages are for development). Not the answer you're looking for? What is the Russian word for the color "teal"? Acoustic plug-in not working at home but works at Guitar Center, Short story about swapping bodies as a job; the person who hires the main character misuses his body. You can confirm this on your system by checking rpm -ql libxml2-devel | grep include | head -4 if also see the include files installed in /usr/include/libxml2/libxml. "Signpost" puzzle from Tatham's collection. add explicit note about dependency on autotools-archive, resolving Gi, https://nick-black.com/bugzilla/show_bug.cgi?id=543. By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. I updated my R packages the other day, and not surprisingly, one package failed to compile. -- Performing Test HAS_O_TMPFILE cd build The problem is it's looking for libxml-2.0, not libxml2. libffi: Unfortunately, however, this appears not to be the case for libxml2 for some reason. Ubuntu and the circle of friends logo are trade marks of Canonical Limited and are used under licence. Looks like the new markdown functionality is affecting the last section`# Install XML` with an `a href` tags, but looks normal when I try to edit the post. Start here for a quick overview of the site, Detailed answers to any questions you might have, Discuss the workings and policies of this site. from /usr/include/libxml2/libxml/tree.h:1307, configure script cannot find libxml2 on mac. I've installed libxml2-dev in my Ubuntu 20.04 terminal (under WSL), as it's a requirement for pgModeler. should still be possible to run binaries linked against older versions. I installed R using apt-get. Located parser file -I/home/kkarius/anaconda3/include/libxml2 -I/home/kkarius/anaconda3/include/parser.h For trying out wordpress 3.8 installation, i had to upgrade my php installation from 5.1.6 to 5.2.4 or later version. Checking directory of LIBXML_INCDIR When a gnoll vampire assumes its hyena form, do its HP change? I've corrected -libs to --libs (initial error from copying and pasting via MS Word). has been greatly improved. ** package XML successfully unpacked and MD5 sums checked Connect and share knowledge within a single location that is structured and easy to search. Is there a generic term for these trajectories? If you also run: ./configure --help. homebrew installs libxml2 as "keg only" which means it is not symlinked to the normal /usr/local/include and /usr/local/lib directories which means nothing can find it without help. @steeldriver Thanks - that answers my original question. rev2023.4.21.43403. Using Bioconductor 3.5 (BiocInstaller 1.26.1), R 3.4.1 (2017-06-30). I have checked the pathname for sysroot and it is most certainly correct. Why do men's bikes have high bars where you can hit your testicles while women's bikes have the bar much lower? checking for gzopen in -lz yes While these symbols were never declared in public Did the drapes in old theatres actually say "ASBESTOS" on them? I had already pkg-config installed but the path was pointing to correct location (AWS instance). -- Configuring done documents which make heavy use of entities are rejected now. https://stackoverflow.com/questions/45775877/configure-error-please-reinstall-the-libzip-distribution. checking for C compiler default output file name a.out I'm hitting other issues now, will post a separate question if I can't work round these. Making statements based on opinion; back them up with references or personal experience. error: Don't move past current position; error: Limit number of parser errors; parser: Lower entity nesting limit with XML_PARSE_HUGE; parser: Don't increase depth twice when parsing internal entities; parser: Improve detection of entity loops; parser: Only report a single entity error; libxml.h: Remove dubious definition of LIBXML_STATIC Learn more about Stack Overflow the company, and our products. from /usr/include/libxml2/libxml/threads.h:35, [ 25%] Building C object CMakeFiles/iio.dir/local.c.o I had the same error but libxml2-dev was already installed so that didn't help. So, why would I get "No package 'libxml2.0' found", and how might I fix this? Yes, the *-dev packages don't exist in Arch Linux, so I can't forget it. Looking for job perks? https://webkaru.net/linux/configure-error-xml2-config-found-please-check-libxml2-installation/, https://stackoverflow.com/questions/45775877/configure-error-please-reinstall-the-libzip-distribution. Ah, so you're using Anaconda's R distribution. The pgModeler instruction includes "To check if the library is correctly installed" run this command: pkg-config libxml2.0 --cflags --libs [1] stats graphics grDevices utils datasets methods base, other attached packages: Internal Why don'y you use the conda package for CRAN's XML (called r-xml)? Like "libxml2-devel". Not the answer you're looking for? checking for pkg-config /usr/bin/pkg-config Sign in I'm unable to determine which is the right version (libxml or libxml2) for 14.04 but you'll want to make sure you have the -dev version installed. Site design / logo 2023 Stack Exchange Inc; user contributions licensed under CC BY-SA. What did help was to install libxml through conda using. Thanks for contributing an answer to Ask Ubuntu! Can the game be left in an invalid state if all state-based actions are replaced? What does "up to" mean in "is first up to launch"? How can I start PostgreSQL server on Mac OS X? Yes, i think it is looking for libxml-2.0.pc in /usr/lib/pkgconfig/ direcotry, but it is not there. Can someone explain why this point is giving me 8.3V? rev2023.4.21.43403. Futuristic/dystopian short story about a man living in a hive society trying to meet his dying mother. You can also subscribe without commenting. xml2 installed but not found during compilation. How can I control PNP and NPN transistors together from one pin? -- Performing Test HAS_O_TMPFILE - Success privacy statement. configure: error: Package requirements ( libxml-2.0 ) were not met: No package 'libxml-2.0' found Consider adjusting the PKG_CONFIG_PATH environment variable if you installed software in a non-standard prefix. The text was updated successfully, but these errors were encountered: https://7me.oji.0j0.jp/2018/07/21/phpenv-build-error-memo/, configure: error: Please reinstall the libzip distribution, apt install libzip-dev The best answers are voted up and rise to the top, Not the answer you're looking for? checking for sed /bin/sed This doesn't work for me. How to combine several legends in one frame? [ 38%] Building C object CMakeFiles/iio.dir/network.c.o while building fro source, libiio seems to be unable to find libxml2, at least unter arch linux. In file included from /usr/include/libxml2/libxml/parser.h:810:0, Browse other questions tagged. Thanks, I verified that /bin is indeed in my path. i.e. -- Looking for newlocale No package 'libxml-2.0' found Consider adjusting the PKG_CONFIG_PATH environment variable if you installed software in a non-standard prefix. You signed in with another tab or window. Asking for help, clarification, or responding to other answers. checking for suffix of executables The error message suggested configure: error: "libxml not found", but. -- Looking for stddef.h -- Looking for strdup Generally to troubleshoot a configure problem, you should download the package tarball, run the installation, and inspect the config.log file. -- The C compiler identification is GNU 7.4.0 By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. Thanks! xml.c always uses /usr/include even though I set my own sysroot path. What's the cheapest way to buy out a sibling's share of our parents house if I have no cash and want to pay less than the appraised value? A freelance writer on latest trends in technology, gadget reviews, How to's and many more. Interpreting non-statistically significant results: Do we have "no evidence" or "insufficient evidence" to reject the null? Are there any canonical examples of the Prime Directive being broken that aren't shown on screen? # Install XML it will tell you the full paths to all the files in that package. : % xsltproc --version Using libxml . Are there any canonical examples of the Prime Directive being broken that aren't shown on screen? checking whether we are using the GNU C compiler yes -- Check size of struct usb_functionfs_descs_head_v2 - done no >>configure: erroe: *** libxml >= 1. . Thanks for contributing an answer to Stack Overflow! Site design / logo 2023 Stack Exchange Inc; user contributions licensed under CC BY-SA. Why does contour plot not show point(s) where function has a discontinuity? Could a subterranean river or aquifer generate enough continuous momentum to power a waterwheel for the purpose of producing electricity? I'm using autoconf 2.69. Ask Ubuntu is a question and answer site for Ubuntu users and developers. okay, I missed that I need to have it installed, now it works! BLAS: /home/kkarius/anaconda3/lib/R/lib/libRblas.so Can I connect multiple USB 2.0 females to a MEAN WELL 5V 10A power supply? What does the power set mean in the construction of Von Neumann universe? R -q --vanilla < Ongoing work on libxml2 relies on funding. Minor 9, Patch 4 for 2.9.4 means no "/usr/lib/pkgconfig/libxml-2.0.pc", usually found in the libxml2 development files. I got the idea from the LibXML2 documentation. ^ from /home/patricaholden/williamson/testbuild/Pro3-Linux/packages/libiio/xml.c:23: make[2]: *** [CMakeFiles/iio.dir/xml.c.o] Error 1. Stack Exchange network consists of 181 Q&A communities including Stack Overflow, the largest, most trusted online community for developers to learn, share their knowledge, and build their careers. Find centralized, trusted content and collaborate around the technologies you use most. EOF, setenv LIBXML_LIBDIR /home/***/anaconda3/lib/, setenv LIBXML_INCDIR /home/***/anaconda3/include/libxml2/, * installing to library /home/***/anaconda3/lib/R/library https://github.com/analogdevicesinc/libiio.git, https://github.com/analogdevicesinc/libiio/blob/master/README.md. By clicking Post Your Answer, you agree to our terms of service, privacy policy and cookie policy. ), I had this issue with PHP 7.4 build from source on Ubuntu 16.04 which I fixed by using the same way for OSX suggested above + installing dev package for libxml2-dev. https://nick-black.com/bugzilla/show_bug.cgi?id=543 we had a bug on this uninformative error. If "Python" What positional accuracy (ie, arc seconds) is necessary to view Saturn, Uranus, beyond? Was there any resolution to this problem? Checking for 1.8: /home/***/anaconda3/include/libxml2/ Is it safe to publish research papers in cooperation with Russian academics? Making statements based on opinion; back them up with references or personal experience. By clicking Post Your Answer, you agree to our terms of service, privacy policy and cookie policy. thanks, which can be solved by installing, thanks, actually my issue was PKG_CONFIG_PATH wasn't setup correctly. * checking for gzopen in -lz. How about saving the world? How about saving the world? [ 23%] Building C object CMakeFiles/iio.dir/utilities.c.o > biocLite("XML") [ 7%] Building C object CMakeFiles/iio.dir/channel.c.o CMakeFiles/iio.dir/build.make:302: recipe for target 'CMakeFiles/iio.dir/xml.c.o' failed -- Found LibXml2: /usr/lib/x86_64-linux-gnu/libxml2.so (found version "2.9.4") [ 5%] Building C object CMakeFiles/iio.dir/channel.c.o You can get all the above info by running: brew info libxml2. Let me know if you have any further problems. cmake --sysroot=${PWD}/../../ubuntu-18.04.2-minimal-armhf-2019-02-16 ../ headers, it was still possible to declare them manually. So the other option left was to install from source. -- Check for working C compiler: /usr/bin/cc provides a separate development package or SDK, be sure it has been About 90 memory errors in code paths handling malloc failures have been fixed. I'll play around with my PATH and see if I can get it going. ================================================== to your account. ** package XML successfully unpacked and MD5 sums checked how to specify which R lib to use when installing a R package? It only takes a minute to sign up. Sign up for a free GitHub account to open an issue and contact its maintainers and the community. Share Improve this answer Follow answered Mar 14, 2019 at 16:39 stdunbar 15.8k 10 35 50 SED_EXTENDED_ARG: -E libxml2-dev R version 3.4.1 (2017-06-30) Notify me of followup comments via e-mail. ~. By clicking Post Your Answer, you agree to our terms of service, privacy policy and cookie policy. Special thanks to Googles Open Source Security Subsidies program for I note there is a pkg-config file listed for libxml2 by homebrew at: which is also available via a non-version-specific symlink as: so, if you have installed pkg-config with homebrew, like this: the solution may be just to add the path for that to your PKG_CONFIG_PATH with: Note: It is only after installing pkg-config (via brew) that homebrew will display pkg-config related "caveats" for many affected packages e.g. checking for gzopen in -lz no Why xargs does not process the last argument? When a gnoll vampire assumes its hyena form, do its HP change? sequential (one-line) endnotes in plain tex/optex. Worked fine on my manjaro machine with just the base-devel group installed. Already on GitHub? What does "up to" mean in "is first up to launch"? You can get all the above info by running: it will tell you the full paths to all the files in that package. See the pkg-config man page for more details. By clicking Sign up for GitHub, you agree to our terms of service and [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 pthread library not found; support for threads will be disabled. Malicious files should be detected reliably now What differentiates living as mere roommates from living in a marriage-like relationship? I am trying to add libvisio in my mac os x from https://wiki.documentfoundation.org/DLP/Libraries/libvisio. I'm trying to figure out what needs to be done to make the configure script happy with libxml2 because libxml-2.0 isn't available. make What differentiates living as mere roommates from living in a marriage-like relationship? What are the advantages of running a power tool on 240 V vs 120 V? Hello- I found this discussion on the mailing list archives: >On Fri, 6 Oct 2000, Pallentin wrote: >> Hi there, >> I try to install ver. It will still work most of the time, but might not suffice when the newer version of btrfs-tools has added new dependencies (like back in the day when mainline btrfs already supported some newer compression algorithm, but Debian's version . and false positives should be reduced. Why in the Sierpiski Triangle is this set being used as the example for the OSC and not a more "natural"? checking whether we are using the GNU C compiler yes Making 'packages.html' done [ 34%] Building C object CMakeFiles/iio.dir/local.c.o -- Found BISON: /usr/bin/bison (found version "3.0.4") I'm trying to compile the lib https://github.com/bjz/gl-rs. @pcercuei correct me if I'm wrong here, but we don't really do anything special with libxml2 in cmake but rely on find_package. Connect and share knowledge within a single location that is structured and easy to search. What are the advantages of running a power tool on 240 V vs 120 V? I don't (yet) know why, but I found out what is putting that in my PATH in the first place: xdm. 565), Improving the copy in the close modal and post notices - 2023 edition, New blog post from our CEO Prashanth: Community is the future of AI, Ubuntu 23.04 (Lunar Lobster) is now released and is no longer off-topic, Announcement: AI-generated content is now permanently banned on Ask Ubuntu, Found 'solutions' to "cannot find -lcrypto" are not working for me, Installation of i386 Deb(Hangul 2008) into AMD64 architecture; dpkg/library error, Testing CUDA in Ubuntu 16.04: /usr/bin/ld: cannot find -lnvcuvid. CMake did not find one. During the ./configure it will produce the following error: ./configure: line 6233: AX_PROG_XSLTPROC: command not found configure: error: Cannot find xsltproc. Browse other questions tagged, Where developers & technologists share private knowledge with coworkers, Reach developers & technologists worldwide, for libxml++2.6 sudo apt-get install libxml++2.6-dev. Making statements based on opinion; back them up with references or personal experience. By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. How do I stop the Flickering on Mode 13h? -- Generating done from /home/patricaholden/williamson/testbuild/Pro3-Linux/packages/libiio/xml.c:23: How a top-ranked engineering school reimagined CS curriculum (Ep. from /usr/include/libxml2/libxml/tree.h:1307, I made sure xml2 and libxml2 are installed (via sudo apt-get install) but that's not enough. By clicking Post Your Answer, you agree to our terms of service, privacy policy and cookie policy. Bioconductor version 3.5 (BiocInstaller 1.26.1), ?biocLite for help Embedded hyperlinks in a thesis or research paper. With over 10 pre-installed distros to choose from, the worry-free installation life is here! * Browse other questions tagged, Where developers & technologists share private knowledge with coworkers, Reach developers & technologists worldwide, How did you launch the R shell above? Did the Golden Gate Bridge 'flatten' under the weight of 300,000 people in 1987? [ 27%] Building C object CMakeFiles/iio.dir/network.c.o Makefile:129: recipe for target 'all' failed Correct name of the libxml2 configuration file for pkg-config is libxml-2.0.pc, you have already installed it from libxml2-dev package. * edition of libxml Check libxml2 installation on CentOS/RHEL/Fedora. checking whether we are cross compiling no sha256sum: b1a2fca3f7722d6c35a4f24974a1b5800e4d84ec5cb756bc61ef2b8c75a19e36.